iBWA uses CMake which is a cross-platform build tool. Basically it will generate a Makefile so you can use make. The requirements are gcc, gmake, cmake 2.8+.

Here’s the steps to build:

$ git clone https://github.com/genome/ibwa.git
Resolving deltas: 100% (38/38), done.

$ cd ibwa
$ mkdir build
$ cd build
$ cmake .. -DCMAKE_BUILD_TYPE=release -DCMAKE_INSTALL_PREFIX=/usr/local
-- Build files have been written to: .../ibwa/build

$ make
Linking CXX executable ibwa-0.5 
[100%] Built target ibwa-0.5

$ sudo make install