sub commands
| calc-covg | Uses calcRoiCovg.c to count covered bases per-gene for each given tumor-normal pair of BAMs. |
| calc-bmr | Calculates mutation rates given per-gene coverage (from "music bmr calc-covg"), and a mutation list |
| calc-covg-helper | Uses calcRoiCovg.c to count covered bases per-gene for a tumor-normal pair of BAMs. |
| calc-wig-covg | Count covered bases per-gene for each given wiggle track format file. |
genome music bmr
NAME
genome music bmr - Calculate gene coverages and background mutation rates.
VERSION
This document describes genome music bmr version 0.0401 (2014-02-13 at 08:01:08)
SYNOPSIS
genome music bmr ...
DESCRIPTION
These tools are part of the MuSiC suite.
LICENSE
Copyright (C) 2010-2011 Washington University in St. Louis.
It is released under the Lesser GNU Public License (LGPL) version 3. See the associated LICENSE file in this distribution.
AUTHORS
Cyriac Kandoth, Ph.D.
SEE ALSO
genome-music-bmr-calc-covg(1), genome-music-bmr-calc-bmr(1), genome-music(1), genome(1)